#!/usr/bin/perl -w # godack10.pl # Copyright 2002 Charlie Kim # # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # For a copy of the GNU General Public License, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA # This program uses the following modules # Perl/Tk 800.023 Copyright (c) 1995-1996 Nick Ing-Simmons. # http://starbase.neosoft.com/%7Eclaird/comp.lang.perl.tk/ptkFAQ.html use Tk; use Tk::Label; use Tk::Button; use Tk::Checkbutton; use Tk::Frame; use Tk::Entry; use Tk::Radiobutton; use Tk::Scale; use Tk::Scrollbar; use Tk::Text; $mw = MainWindow->new(-title=>'GODACK'); $mw->Label(-text=>'Good Data filtering by Charlie Kim', )->pack(); $mw->Label(-text=>"Copyright 2002 Charlie Kim GNU General Public License\n")->pack(); # Input # $inputfr = $mw->Frame(-relief=>'groove', -label=>'PCL Input File', -borderwidth=>2, )->pack(-side=>'top', -anchor=>'nw', -fill=>'both', ); $single_e = $inputfr->Entry(-state=>'normal', -textvariable=> \$singlefile, -width=>30, )->pack(-side=>'left', -pady=>3, ); $inputfr->Button(-text=>'Browse', -command=> \&selectsinglefile, -borderwidth=>1, -padx=> 0, -pady=> 0, )->pack(-side=>'left', ); $filterfr = $mw->Frame(-relief=>'groove', -label=>'Percent Good Data Points Filtering Value', -borderwidth=>2, )->pack(-side=>'top', -anchor=>'nw', -fill=>'both', ); $filterval = 80; $filterfr->Entry(-state=>'normal', -textvariable=> \$filterval, -width=>4, )->pack(-side=>'top', -pady=>3, ); # Run # $mw->Button(-text=>"Remove Lines with Insufficient Data Points", -command=> \&main, -state=> 'normal', )->pack(); $mw->Button(-text=>"Exit", -command=> sub { exit }, )->pack(); MainLoop; sub selectsinglefile { my $opentypes = [ "{All files} * ", "{PCL files} {.pcl} ", "{Text files} {.txt} ", ]; my $file = $mw->getOpenFile(-filetypes=>$opentypes); if (defined $file and $file ne '') { $single_e->delete(0, 'end'); $single_e->insert(0, $file); $single_e->xview('end'); } } sub errormsg { my $msg = shift; my $errorwin = $mw->Toplevel(); $errorwin->Label(-text=> $msg, )->pack(); $errorwin->Button(-text=>'Close', -command=> sub { $errorwin->destroy }, )->pack(); $errorwin->waitWindow(); } sub main { my $cutoff = $filterval / 100; open(INFILE,$singlefile) or die "Can't open input file\n"; my $outfile = $mw->getSaveFile(-title=>'Save Results As'); open(OUTFILE,">$outfile") or die "Can't open output file\n"; chomp($header=); my $gweight = 0; $gweight++ if $header =~ /GWEIGHT/i; print OUTFILE "$header\n"; my @temp = split(/\t/,$header); my $datacol = $#temp - $gweight - 1; while () { chomp; if (/EWEIGHT/i) { print OUTFILE "$_\n"; next; } my @tempdata = split(/\t/); my $counter = 0; for (my $c = 2 + $gweight; $c <= $#tempdata; $c++) { $counter++ if $tempdata[$c]; } print OUTFILE "$_\n" if $counter / $datacol >= $cutoff; } close INFILE; close OUTFILE; $mw->bell; &errormsg("Program complete"); }